How time flies. We finally got two papers out about this.
Fourment, M., Claywell, B. C., Dinh, V., McCoy, C., Matsen, F. A., & Darling, A. E. (2017, June 2). Effective Online Bayesian Phylogenetics Via Sequential Monte Carlo With Guided Proposals. bioRxiv. https://doi.org/10.1101/145219
Dinh, V., Darling, A. E., & Matsen, F. A., IV. (2016, October 26). Online Bayesian phylogenetic inference: theoretical foundations via Sequential Monte Carlo. arXiv [q-bio.PE]. Retrieved from http://arxiv.org/abs/1610.08148
If you don't like the measure theory of the second one, we're going to post a revised version with less technical explanations in a few weeks.
And a blog post about the first paper: